The Proteomics Show

As part of the US HUPO sponsored "All the Parts", Ben and Ben sat down to talk with Dr. Laura Thompson, Mystic Aquarium.

keywords: exhaled breath condensate; diving physiology; decompression sickness; neuroimmune response; adaptive inflammation; Le Grand Bleu (The Big Blue; 1988)

As part of the US HUPO sponsored "All the Parts", Ben and Ben sat down to talk with Dr. Kevin Schey, Vanderbilt University.

keywords: lens; retina; newts; salamanders; macular degeneration

As part of the US HUPO sponsored "All the Parts", Ben and Ben sat down to talk with Dr. Jochen Schwenk, KTH Royal Institute of Technology and SciLifeLab.

keywords: serum; plasma; microsampling; study design

As part of the US HUPO sponsored "All the Parts", Ben and Ben sat down to talk with Dr. Charles Schurman, Buck Institute for Research on Aging.

keywords: osteoporosis; Haversian system; lacunar-canalicular system; perilacunar/canalicular remodeling; Deadpool 2; Unbreakable (2000)

As part of the US HUPO sponsored "All the Parts", Ben and Ben sat down to talk with Dr. Lekha Sleno, Université du Québec à Montréal.

keywords: dry eye; biomarkers; Schirmer strips

As part of the US HUPO sponsored "All the Parts", Ben and Ben sat down to talk with Dr. Sasha Singh, Harvard Medical School, and Dr. Sarah Parker, Cedars-Sinai (also featured in Ep 15).

keywords: hEDS; POTS; valves; foamy macrophages; atherosclerosis; aneurysm

As part of the US HUPO sponsored "All the parts", Ben and Ben sat down to talk with Dr. Jan Mulder, Karolinska Institutet.

keywords: brain; brain atlas; human protein atlas; Alzheimer's Disease; stereo-seq

As part of the US HUPO sponsored "All the Parts", Ben sat down to talk with Dr. Glendon Parker, University of California, Davis.

keywords: hair; forensics; SAAVs; single amino acid variants; species identification

As part of the US HUPO sponsored "Pony Express", Renã A. S. Robinson (co-host from Ep 35; featured in Ep 20) and Ben Orsburn sat down to talk with Dr. Natalie Clark, Broad Institute, in front of a live audience at the 2026 US HUPO meeting in St. Louis.

keywords: CPTAC; cancer; bioinformatics; super simple songs; decapitated fruit fly

As part of the US HUPO sponsored "Pony Express" series highlighting speakers at the upcoming 2026 US HUPO meeting in St. Louis, Ben and Ben sit down to talk with Dr. William Noble, University of Washington, recipient of the 2026 Gilbert S. Omenn Computational Proteomics Award.

keywords: genomics; machine learning; AI; computational; Bridgerton; cocaine monkeys; birding

As part of the US HUPO sponsored "Pony Express" series highlighting speakers at the upcoming 2026 US HUPO meeting in St. Louis, Ben and Ben sit down to talk with Dr. Jeffrey Gordon, Washington University, who will be giving the opening plenary.

keywords: microbiome; human gut; #24; philosophy of science

As part of the US HUPO sponsored "Pony Express" series highlighting speakers at the upcoming 2026 US HUPO meeting in St. Louis, Ben and Ben sit down to talk with Dr. Lingjun Li, University of Wisconsin-Madison, co-awardees of the 2026 Catherine E. Costello Award for Exemplary Achievements in Proteomics along with Dr. Neil Kelleher (previously featured in Ep. 32).

keywords: glycobiology; glycans; neuropeptides; tissue expansion; mass spec imaging

As part of the US HUPO sponsored "Pony Express" series highlighting speakers at the upcoming 2026 US HUPO meeting in St. Louis, Ben and Ben sit down to talk with Dr. Michael MacCoss, University of Washington, winner of the 2026 Donald F. Hunt Distinguished Contribution in Proteomics Award.

keywords: quantitative proteomics; skyline

For the final episode of the US HUPO sponsored "Alt Proteomics" series highlighting alternative proteomics things, Ben and Ben sit down to talk with Dr. Timothy Cleland, Smithsonian Institution.

Keywords: forensics; glue; conservation science; paleoproteomics

At the request of the HUPO Toronto 2025 organizers, Ben Orsburn and a special guest co-host sat down with Dr. Kenneth Weke, University of Victoria, in front of a live audience.

Special thanks to Miguel our amazing sound engineer.

Keywords: lepto, one health

For a special US HUPO sponsored episode highlighting the upcoming HUPO Meeting in Toronto, Ben and Ben sit down to talk with one of the organizers, Dr. Mathieu Lavallée-Adam, University of Ottawa.

Keywords: bioinformatics; hockey; Toronto

For a special US HUPO sponsored episode highlighting the upcoming HUPO Meeting in Toronto, Ben and Ben sit down to talk with one of the organizers, Dr. Jennifer Geddes-McAlister, University of Guelph.

keywords: HUPO; Toronto; Fungal proteomics; one health

As part of the US HUPO sponsored "Alt Proteomics" series highlighting alternative proteomics things, Ben and Ben sit down to talk with Dr. Olga Dudchenko, Baylor College of Medicine.

keywords: structural genomics; Hi-C; DNA Zoo

As part of the US HUPO sponsored "Alt Proteomics" series highlighting alternative proteomics things, Ben and Ben sit down to talk with Dr. Ashley Spicer, California Department of Fish and Wildlife.

keywords: forensics; wildlife forensics

As part of the US HUPO sponsored "Alt Proteomics" series highlighting alternative proteomics things, Ben and Ben sit down to talk with Chef Michael Toscano of Le Farfalle (Charleston, SC), da Toscano (NYC), Porchetta Shop (Charleston, SC), Fugazzi at Revelry Brewing (Charleston, SC), 3's Golf (Greenville, SC), and Blanca Estrada Taqueria (Charleston, SC).

Keywords: pasta; culinary; golf

As part of the US HUPO sponsored "Alt Proteomics" series highlighting alternative proteomics things, Ben and Ben sit down to talk with Dr. Yasset Perez-Riverol, EMBL-European Bioinformatics Institute.

Keywords: open science; FOSS; FAIR; data archives; data repositories; affinity proteomics

As part of the US HUPO sponsored "Alt Proteomics" series highlighting alternative proteomics things, Ben and Ben sit down to talk with Dr. Graham Wiley, Oklahoma Medical Research Foundation.

Keywords: Olink; Affinity-based proteomics

As part of the US HUPO sponsored "Alt Proteomics" series highlighting alternative proteomics things, Ben and Ben sit down to talk with Dr. Jeff Nivala, University of Washington.

Intro/outro music by Jeff.

Keywords: nanopore; biophysics; single molecule detection; ONT; oxford nanopore technologies

As part of the US HUPO sponsored "Alt Proteomics" series highlighting alternative proteomics things, Ben and Ben sit down to talk with Dr. Cecilia Lindskog, Uppsala University.

As part of the US HUPO sponsored "Alt Proteomics" series highlighting alternative proteomics things, Ben and Ben sit down to talk about the upcoming season.

As part of the non-sponsored sporadic "B-sides" series*, Ben and Ben sit down and talk with Dr. Kathryn Lilley, University of Cambridge.

(* this series is where we put guests we want to talk to but who do not fit within any sponsored series, but is still proteomics.... mostly)

As part of the [insert something here] series, Ben sits down to talk with our favorite press correspondent, Ben, about the recent ASMS Conference in Baltimore, MD.

As part of the non-sponsored sporadic "B-sides" series*, Ben and Ben sit down and talk with Dr. Avi Ma'ayan, Mount Sinai.

(* this series is where we put guests we want to talk to but who do not fit within any sponsored series, but is still proteomics.... mostly)

As part of the non-sponsored sporadic "B-sides" series*, Ben and Ben sit down and talk with Dr. Anna Barker, Chief Strategy Officer at the Ellison Medical Institute and Co-Director of CAS-Biomedicine at Arizona State University.

(* this series is where we put guests we want to talk to but who do not fit within any sponsored series, but is still proteomics.... mostly)

As part of the non-sponsored sporadic "B-sides" series*, Ben and Ben sit down and talk with Dr. Rob Beynon, University of Liverpool.

(* this series is where we put guests we want to talk to but who do not fit within any sponsored series, but is still proteomics.... mostly)

As part of the non-sponsored sporadic "B-sides" series*, Ben and Ben sit down and talk with Dr. Michael Shortreed, University of Wisconsin-Madison.

(* this series is where we put guests we want to talk to but who do not fit within any sponsored series, but is still proteomics.... mostly)

As part of the non-sponsored sporadic "B-sides" series*, Ben and Ben sit down and talk with Dr. Sue Weintraub, University of Texas Health Science Center at San Antonio.

(* this series is where we put guests we want to talk to but who do not fit within any sponsored series, but is still proteomics.... mostly)

As part of the US HUPO sponsored "Philly Express" series highlighting speakers at the upcoming 2025 US HUPO meeting in Philadelphia, Ben and Ben sit down to talk with Dr. Keenan Walker, National Institute on Aging - National Institutes of Health.

*note: this episode was recorded early January 2025, but could not be released until after US HUPO 2025.

As part of the US HUPO sponsored "Philly Express" series highlighting speakers at the upcoming 2025 US HUPO meeting in Philadelphia, Ben and Ben sit down to talk with Dr. Jesse Meyer, Cedars Sinai Medical Center, winner of the 2025 Robert J. Cotter New Investigator Award.

As part of the US HUPO sponsored "Philly Express" series highlighting speakers at the upcoming 2025 US HUPO meeting in Philadelphia, Ben and Ben sit down to talk with Dr. Kojo Elenitoba-Johnson, Memorial Sloan Kettering Cancer Center.

As part of the US HUPO sponsored "Philly Express" series highlighting speakers at the upcoming 2025 US HUPO meeting in Philadelphia, Ben and Ben sit down to talk with Dr. Joshua Coon, University of Wisconsin-Madison, winner of the 2025 Donald F. Hunt Distinguished Contribution in Proteomics Award.

As part of the US HUPO sponsored "Philly Express" series highlighting speakers at the upcoming 2025 US HUPO meeting in Philadelphia, Ben and Ben sit down to talk with Dr. David Fenyo, NYU Grossman School of Medicine, winner of the 2025 Gilbert S. Omenn Computational Proteomics Award.

As part of the US HUPO sponsored "Philly Express" series highlighting speakers at the upcoming 2025 US HUPO meeting in Philadelphia, Ben and Ben sit down to talk with Dr. Ileana Cristea, Princeton University, winner of the 2025 Catherine E. Costello Award for Exemplary Achievements in Proteomics.

As part of the US HUPO sponsored "Undergrad Expo" series highlighting undergraduate (or recent grads in Chad's case) members of US HUPO (in collaboration with the Mentorship Working Group), Ben and Ben sit down to talk with Chad Hyer, Brigham Young University.

As part of the US HUPO sponsored "Undergrad Expo" series highlighting undergraduate members of US HUPO (in collaboration with the Mentorship Working Group), Ben and Ben sit down to talk with Arabella Garcia, University of Minnesota Twin Cities.

As part of the US HUPO sponsored "Undergrad Expo" series highlighting undergraduate members of US HUPO (in collaboration with the Mentorship Working Group), Ben and Ben sit down to talk with Ethan Lilly, Vanderbilt University.